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    Scholar MCP

    mcpkey · package
    io.github.pvliesdonk/scholar-mcp · v2.0.0
    deploy just this

    FastMCP server for scholarly papers, patents, books and standards with docling PDF conversion

    run it

    on your own machines, one way per deploy method
    generated from the record, not tested yet
    # once, as root:
# as_mcp DIR COMMAND...: runs COMMAND as the mcp user in DIR, its home, sandboxed as the
# units are: a package's install scripts can write to DIR only, as the server later can
as_mcp() {
  local dir="$1"; shift
  systemd-run --quiet --wait --pipe --collect --uid=mcp --gid=mcp \
    -p WorkingDirectory="$dir" -p Environment=HOME="$dir" -p ReadWritePaths="$dir" \
    -p NoNewPrivileges=true -p ProtectSystem=strict -p ProtectHome=true -p PrivateTmp=true \
    -- "$@" </dev/null
}
install -d -m 0750 -o mcp -g mcp /var/lib/mcp/scholar
# scholar: its packages, installed whole before its unit starts (no session installs)
systemctl stop mcp-my-agent-scholar.service 2>/dev/null || true
as_mcp /var/lib/mcp/scholar uv tool install pvliesdonk-scholar-mcp==2.0.0
as_mcp /var/lib/mcp/scholar uv tool install mcp-proxy

#!/usr/bin/env bash
# scholar (io.github.pvliesdonk/scholar-mcp), recipe baremetal (generated).
# Generated by Hub for toolset "my-agent"; started by mcp-my-agent-scholar.service.
set -euo pipefail
export HOST=127.0.0.1 PORT=8101
exec uvx mcp-proxy --host 127.0.0.1 --port 8101 --pass-environment -- uvx pvliesdonk-scholar-mcp==2.0.0

[Unit]
Description=MCP server scholar (toolset my-agent), generated by Hub
After=network-online.target
Wants=network-online.target

[Service]
Type=simple
User=mcp
Group=mcp
EnvironmentFile=/etc/mcp/my-agent.env
Environment=HOME=/var/lib/mcp/scholar
WorkingDirectory=/var/lib/mcp/scholar
ExecStart=/opt/mcp/my-agent/bin/scholar.sh
Restart=on-failure
RestartSec=5
NoNewPrivileges=true
ProtectSystem=strict
ProtectHome=true
PrivateTmp=true
ReadWritePaths=/var/lib/mcp/scholar

[Install]
WantedBy=multi-user.target
    generated from the record, not tested yet
    docker run --rm -p 127.0.0.1:8101:8000 -e SCHOLAR_MCP_KV_STORE_URL -e SCHOLAR_MCP_TOOLS_ALLOW -e SCHOLAR_MCP_TOOLS_DENY -e SCHOLAR_MCP_SERVER_NAME -e SCHOLAR_MCP_INSTANCE_DESCRIPTION -e SCHOLAR_MCP_INSTRUCTIONS_EXTRA -e SCHOLAR_MCP_INSTRUCTIONS -e FASTMCP_LOG_LEVEL -e FASTMCP_ENABLE_RICH_LOGGING -e SCHOLAR_GITHUB_TOKEN -e SCHOLAR_MCP_READ_ONLY -e SCHOLAR_MCP_S2_API_KEY -e SCHOLAR_MCP_DOCLING_URL -e SCHOLAR_MCP_VLM_API_URL -e SCHOLAR_MCP_VLM_API_KEY -e SCHOLAR_MCP_VLM_MODEL -e SCHOLAR_MCP_CACHE_DIR -e SCHOLAR_MCP_CONTACT_EMAIL -e SCHOLAR_MCP_EPO_CONSUMER_KEY -e SCHOLAR_MCP_EPO_CONSUMER_SECRET -e SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY -e SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S -e SCHOLAR_MCP_JOBS_RESULT_TTL_S -e SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT ghcr.io/astral-sh/uv:python3.12-bookworm-slim sh -c 'uvx mcp-proxy --host 0.0.0.0 --port 8000 --pass-environment -- uvx pvliesdonk-scholar-mcp==2.0.0'
    generated from the record, not tested yet
    # Generated by Hub for toolset "my-agent" (2026-10-18T19:18:00+00:00).
# Each package server runs behind a stdio->HTTP bridge and listens on localhost only.
#   cp .env.example .env    # fill the ${VAR}s
#   docker compose up -d && bash smoke.sh
# Remote servers are not here: clients reach them directly (see clients/).
name: mcp-my-agent
services:
  scholar:
    image: ghcr.io/astral-sh/uv:python3.12-bookworm-slim
    command:
    - sh
    - -c
    - uvx mcp-proxy --host 0.0.0.0 --port 8000 --pass-environment -- uvx pvliesdonk-scholar-mcp==2.0.0
    ports:
    - 127.0.0.1:8101:8000
    volumes:
    - uv-cache:/root/.cache/uv
    healthcheck:
      test:
      - CMD
      - python3
      - -c
      - import urllib.request; urllib.request.urlopen('http://127.0.0.1:8000/status')
      interval: 30s
      timeout: 5s
      retries: 5
      start_period: 2m
    restart: unless-stopped
    environment:
      SCHOLAR_MCP_KV_STORE_URL: ${SCHOLAR_MCP_KV_STORE_URL}
      SCHOLAR_MCP_TOOLS_ALLOW: ${SCHOLAR_MCP_TOOLS_ALLOW}
      SCHOLAR_MCP_TOOLS_DENY: ${SCHOLAR_MCP_TOOLS_DENY}
      SCHOLAR_MCP_SERVER_NAME: ${SCHOLAR_MCP_SERVER_NAME}
      SCHOLAR_MCP_INSTANCE_DESCRIPTION: ${SCHOLAR_MCP_INSTANCE_DESCRIPTION}
      SCHOLAR_MCP_INSTRUCTIONS_EXTRA: ${SCHOLAR_MCP_INSTRUCTIONS_EXTRA}
      SCHOLAR_MCP_INSTRUCTIONS: ${SCHOLAR_MCP_INSTRUCTIONS}
      FASTMCP_LOG_LEVEL: ${FASTMCP_LOG_LEVEL}
      FASTMCP_ENABLE_RICH_LOGGING: ${FASTMCP_ENABLE_RICH_LOGGING}
      SCHOLAR_GITHUB_TOKEN: ${SCHOLAR_GITHUB_TOKEN}
      SCHOLAR_MCP_READ_ONLY: ${SCHOLAR_MCP_READ_ONLY}
      SCHOLAR_MCP_S2_API_KEY: ${SCHOLAR_MCP_S2_API_KEY}
      SCHOLAR_MCP_DOCLING_URL: ${SCHOLAR_MCP_DOCLING_URL}
      SCHOLAR_MCP_VLM_API_URL: ${SCHOLAR_MCP_VLM_API_URL}
      SCHOLAR_MCP_VLM_API_KEY: ${SCHOLAR_MCP_VLM_API_KEY}
      SCHOLAR_MCP_VLM_MODEL: ${SCHOLAR_MCP_VLM_MODEL}
      SCHOLAR_MCP_CACHE_DIR: ${SCHOLAR_MCP_CACHE_DIR}
      SCHOLAR_MCP_CONTACT_EMAIL: ${SCHOLAR_MCP_CONTACT_EMAIL}
      SCHOLAR_MCP_EPO_CONSUMER_KEY: ${SCHOLAR_MCP_EPO_CONSUMER_KEY}
      SCHOLAR_MCP_EPO_CONSUMER_SECRET: ${SCHOLAR_MCP_EPO_CONSUMER_SECRET}
      SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY: ${SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY}
      SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S: ${SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S}
      SCHOLAR_MCP_JOBS_RESULT_TTL_S: ${SCHOLAR_MCP_JOBS_RESULT_TTL_S}
      SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT: ${SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT}
volumes:
  npm-cache: {}
  uv-cache: {}
    generated from the record, not tested yet
    # Generated by Hub for toolset "my-agent" (2026-10-18T19:18:00+00:00).
#   kubectl create namespace mcp
#   kubectl -n mcp create secret generic mcp-credentials --from-env-file=.env
#   kubectl apply -f kubernetes.yaml
# Services are cluster-internal: <name>.mcp.svc.cluster.local:8000/mcp. Put an ingress
# with auth in front before exposing any of them.
apiVersion: v1
kind: Namespace
metadata:
  name: mcp
---
apiVersion: apps/v1
kind: Deployment
metadata:
  name: scholar
  namespace: mcp
  labels: &id001
    app: scholar
spec:
  replicas: 1
  selector:
    matchLabels: *id001
  template:
    metadata:
      labels: *id001
    spec:
      containers:
      - name: scholar
        image: ghcr.io/astral-sh/uv:python3.12-bookworm-slim
        ports:
        - containerPort: 8000
          name: http
        env:
        - name: SCHOLAR_MCP_KV_STORE_URL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_KV_STORE_URL
        - name: SCHOLAR_MCP_TOOLS_ALLOW
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_TOOLS_ALLOW
        - name: SCHOLAR_MCP_TOOLS_DENY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_TOOLS_DENY
        - name: SCHOLAR_MCP_SERVER_NAME
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_SERVER_NAME
        - name: SCHOLAR_MCP_INSTANCE_DESCRIPTION
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_INSTANCE_DESCRIPTION
        - name: SCHOLAR_MCP_INSTRUCTIONS_EXTRA
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_INSTRUCTIONS_EXTRA
        - name: SCHOLAR_MCP_INSTRUCTIONS
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_INSTRUCTIONS
        - name: FASTMCP_LOG_LEVEL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: FASTMCP_LOG_LEVEL
        - name: FASTMCP_ENABLE_RICH_LOGGING
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: FASTMCP_ENABLE_RICH_LOGGING
        - name: SCHOLAR_GITHUB_TOKEN
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_GITHUB_TOKEN
        - name: SCHOLAR_MCP_READ_ONLY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_READ_ONLY
        - name: SCHOLAR_MCP_S2_API_KEY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_S2_API_KEY
        - name: SCHOLAR_MCP_DOCLING_URL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_DOCLING_URL
        - name: SCHOLAR_MCP_VLM_API_URL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_VLM_API_URL
        - name: SCHOLAR_MCP_VLM_API_KEY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_VLM_API_KEY
        - name: SCHOLAR_MCP_VLM_MODEL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_VLM_MODEL
        - name: SCHOLAR_MCP_CACHE_DIR
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_CACHE_DIR
        - name: SCHOLAR_MCP_CONTACT_EMAIL
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_CONTACT_EMAIL
        - name: SCHOLAR_MCP_EPO_CONSUMER_KEY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_EPO_CONSUMER_KEY
        - name: SCHOLAR_MCP_EPO_CONSUMER_SECRET
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_EPO_CONSUMER_SECRET
        - name: SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY
        - name: SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S
        - name: SCHOLAR_MCP_JOBS_RESULT_TTL_S
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_JOBS_RESULT_TTL_S
        - name: SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT
          valueFrom:
            secretKeyRef:
              name: mcp-credentials
              key: SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT
        args:
        - sh
        - -c
        - uvx mcp-proxy --host 0.0.0.0 --port 8000 --pass-environment -- uvx pvliesdonk-scholar-mcp==2.0.0
        readinessProbe:
          httpGet:
            path: /status
            port: http
          initialDelaySeconds: 10
---
apiVersion: v1
kind: Service
metadata:
  name: scholar
  namespace: mcp
spec:
  selector:
    app: scholar
  ports:
  - port: 8000
    targetPort: http
    name: http
    generated from the record, not tested yet
    # Generated by Hub for toolset "my-agent" (2026-10-18T19:18:00+00:00).
# Credentials come from the Secret 'mcp-credentials' (kubectl create secret generic ... --from-env-file=.env).
# Each server under `servers` is one Deployment + Service; the keys after it configure
# upstream charts a worker verified.
servers:
  scholar:
    enabled: true
    replicas: 1
    port: 8000
    path: /mcp
    container:
      name: scholar
      image: ghcr.io/astral-sh/uv:python3.12-bookworm-slim
      ports:
      - containerPort: 8000
        name: http
      env:
      - name: SCHOLAR_MCP_KV_STORE_URL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_KV_STORE_URL
      - name: SCHOLAR_MCP_TOOLS_ALLOW
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_TOOLS_ALLOW
      - name: SCHOLAR_MCP_TOOLS_DENY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_TOOLS_DENY
      - name: SCHOLAR_MCP_SERVER_NAME
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_SERVER_NAME
      - name: SCHOLAR_MCP_INSTANCE_DESCRIPTION
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_INSTANCE_DESCRIPTION
      - name: SCHOLAR_MCP_INSTRUCTIONS_EXTRA
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_INSTRUCTIONS_EXTRA
      - name: SCHOLAR_MCP_INSTRUCTIONS
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_INSTRUCTIONS
      - name: FASTMCP_LOG_LEVEL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: FASTMCP_LOG_LEVEL
      - name: FASTMCP_ENABLE_RICH_LOGGING
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: FASTMCP_ENABLE_RICH_LOGGING
      - name: SCHOLAR_GITHUB_TOKEN
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_GITHUB_TOKEN
      - name: SCHOLAR_MCP_READ_ONLY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_READ_ONLY
      - name: SCHOLAR_MCP_S2_API_KEY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_S2_API_KEY
      - name: SCHOLAR_MCP_DOCLING_URL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_DOCLING_URL
      - name: SCHOLAR_MCP_VLM_API_URL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_VLM_API_URL
      - name: SCHOLAR_MCP_VLM_API_KEY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_VLM_API_KEY
      - name: SCHOLAR_MCP_VLM_MODEL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_VLM_MODEL
      - name: SCHOLAR_MCP_CACHE_DIR
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_CACHE_DIR
      - name: SCHOLAR_MCP_CONTACT_EMAIL
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_CONTACT_EMAIL
      - name: SCHOLAR_MCP_EPO_CONSUMER_KEY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_EPO_CONSUMER_KEY
      - name: SCHOLAR_MCP_EPO_CONSUMER_SECRET
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_EPO_CONSUMER_SECRET
      - name: SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY
      - name: SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S
      - name: SCHOLAR_MCP_JOBS_RESULT_TTL_S
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_JOBS_RESULT_TTL_S
      - name: SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT
        valueFrom:
          secretKeyRef:
            name: mcp-credentials
            key: SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT
      args:
      - sh
      - -c
      - uvx mcp-proxy --host 0.0.0.0 --port 8000 --pass-environment -- uvx pvliesdonk-scholar-mcp==2.0.0
      readinessProbe:
        httpGet:
          path: /status
          port: http
        initialDelaySeconds: 10

# helm install my-agent helm/my-agent -n mcp

    in the cloud

    one click: the provider's deploy form opens filled in, in your own account
    koyeb
    deploy to koyeb

    The form opens with CHANGE_ME for each value you supply: SCHOLAR_MCP_KV_STORE_URL, SCHOLAR_MCP_TOOLS_ALLOW, SCHOLAR_MCP_TOOLS_DENY, SCHOLAR_MCP_SERVER_NAME, SCHOLAR_MCP_INSTANCE_DESCRIPTION, SCHOLAR_MCP_INSTRUCTIONS_EXTRA, SCHOLAR_MCP_INSTRUCTIONS, FASTMCP_LOG_LEVEL, FASTMCP_ENABLE_RICH_LOGGING, SCHOLAR_GITHUB_TOKEN, SCHOLAR_MCP_READ_ONLY, SCHOLAR_MCP_S2_API_KEY, SCHOLAR_MCP_DOCLING_URL, SCHOLAR_MCP_VLM_API_URL, SCHOLAR_MCP_VLM_API_KEY, SCHOLAR_MCP_VLM_MODEL, SCHOLAR_MCP_CACHE_DIR, SCHOLAR_MCP_CONTACT_EMAIL, SCHOLAR_MCP_EPO_CONSUMER_KEY, SCHOLAR_MCP_EPO_CONSUMER_SECRET, SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY, SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S, SCHOLAR_MCP_JOBS_RESULT_TTL_S, SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT. Fill them in before you deploy.

    Clients connect to the service's https://…koyeb.app address plus /mcp.

    azure
    deploy to azuretemplate

    A Container Apps environment with one app per server, each with HTTPS ingress and one replica. The portal asks for each value you supply as a secure parameter; the deployment's outputs list the endpoints.

    connect to it

    copy what your client needs
    uvx pvliesdonk-scholar-mcp==2.0.0
# env: SCHOLAR_MCP_KV_STORE_URL, SCHOLAR_MCP_TOOLS_ALLOW, SCHOLAR_MCP_TOOLS_DENY, SCHOLAR_MCP_SERVER_NAME, SCHOLAR_MCP_INSTANCE_DESCRIPTION, SCHOLAR_MCP_INSTRUCTIONS_EXTRA, SCHOLAR_MCP_INSTRUCTIONS, FASTMCP_LOG_LEVEL, FASTMCP_ENABLE_RICH_LOGGING, SCHOLAR_GITHUB_TOKEN, SCHOLAR_MCP_READ_ONLY, SCHOLAR_MCP_S2_API_KEY, SCHOLAR_MCP_DOCLING_URL, SCHOLAR_MCP_VLM_API_URL, SCHOLAR_MCP_VLM_API_KEY, SCHOLAR_MCP_VLM_MODEL, SCHOLAR_MCP_CACHE_DIR, SCHOLAR_MCP_CONTACT_EMAIL, SCHOLAR_MCP_EPO_CONSUMER_KEY, SCHOLAR_MCP_EPO_CONSUMER_SECRET, SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY, SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S, SCHOLAR_MCP_JOBS_RESULT_TTL_S, SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT
    {
  "mcpServers": {
    "scholar": {
      "command": "uvx",
      "args": [
        "pvliesdonk-scholar-mcp==2.0.0"
      ],
      "env": {
        "SCHOLAR_MCP_KV_STORE_URL": "${SCHOLAR_MCP_KV_STORE_URL}",
        "SCHOLAR_MCP_TOOLS_ALLOW": "${SCHOLAR_MCP_TOOLS_ALLOW}",
        "SCHOLAR_MCP_TOOLS_DENY": "${SCHOLAR_MCP_TOOLS_DENY}",
        "SCHOLAR_MCP_SERVER_NAME": "${SCHOLAR_MCP_SERVER_NAME}",
        "SCHOLAR_MCP_INSTANCE_DESCRIPTION": "${SCHOLAR_MCP_INSTANCE_DESCRIPTION}",
        "SCHOLAR_MCP_INSTRUCTIONS_EXTRA": "${SCHOLAR_MCP_INSTRUCTIONS_EXTRA}",
        "SCHOLAR_MCP_INSTRUCTIONS": "${SCHOLAR_MCP_INSTRUCTIONS}",
        "FASTMCP_LOG_LEVEL": "${FASTMCP_LOG_LEVEL}",
        "FASTMCP_ENABLE_RICH_LOGGING": "${FASTMCP_ENABLE_RICH_LOGGING}",
        "SCHOLAR_GITHUB_TOKEN": "${SCHOLAR_GITHUB_TOKEN}",
        "SCHOLAR_MCP_READ_ONLY": "${SCHOLAR_MCP_READ_ONLY}",
        "SCHOLAR_MCP_S2_API_KEY": "${SCHOLAR_MCP_S2_API_KEY}",
        "SCHOLAR_MCP_DOCLING_URL": "${SCHOLAR_MCP_DOCLING_URL}",
        "SCHOLAR_MCP_VLM_API_URL": "${SCHOLAR_MCP_VLM_API_URL}",
        "SCHOLAR_MCP_VLM_API_KEY": "${SCHOLAR_MCP_VLM_API_KEY}",
        "SCHOLAR_MCP_VLM_MODEL": "${SCHOLAR_MCP_VLM_MODEL}",
        "SCHOLAR_MCP_CACHE_DIR": "${SCHOLAR_MCP_CACHE_DIR}",
        "SCHOLAR_MCP_CONTACT_EMAIL": "${SCHOLAR_MCP_CONTACT_EMAIL}",
        "SCHOLAR_MCP_EPO_CONSUMER_KEY": "${SCHOLAR_MCP_EPO_CONSUMER_KEY}",
        "SCHOLAR_MCP_EPO_CONSUMER_SECRET": "${SCHOLAR_MCP_EPO_CONSUMER_SECRET}",
        "SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY": "${SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY}",
        "SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S": "${SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S}",
        "SCHOLAR_MCP_JOBS_RESULT_TTL_S": "${SCHOLAR_MCP_JOBS_RESULT_TTL_S}",
        "SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT": "${SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT}"
      }
    }
  }
}
    #!/usr/bin/env bash
# Registers every server with Claude Code (run once; `claude mcp list` to check).
set -euo pipefail
set -a; [ -f .env ] && source .env; set +a
claude mcp add scholar -e "SCHOLAR_MCP_KV_STORE_URL=${SCHOLAR_MCP_KV_STORE_URL}" -e "SCHOLAR_MCP_TOOLS_ALLOW=${SCHOLAR_MCP_TOOLS_ALLOW}" -e "SCHOLAR_MCP_TOOLS_DENY=${SCHOLAR_MCP_TOOLS_DENY}" -e "SCHOLAR_MCP_SERVER_NAME=${SCHOLAR_MCP_SERVER_NAME}" -e "SCHOLAR_MCP_INSTANCE_DESCRIPTION=${SCHOLAR_MCP_INSTANCE_DESCRIPTION}" -e "SCHOLAR_MCP_INSTRUCTIONS_EXTRA=${SCHOLAR_MCP_INSTRUCTIONS_EXTRA}" -e "SCHOLAR_MCP_INSTRUCTIONS=${SCHOLAR_MCP_INSTRUCTIONS}" -e "FASTMCP_LOG_LEVEL=${FASTMCP_LOG_LEVEL}" -e "FASTMCP_ENABLE_RICH_LOGGING=${FASTMCP_ENABLE_RICH_LOGGING}" -e "SCHOLAR_GITHUB_TOKEN=${SCHOLAR_GITHUB_TOKEN}" -e "SCHOLAR_MCP_READ_ONLY=${SCHOLAR_MCP_READ_ONLY}" -e "SCHOLAR_MCP_S2_API_KEY=${SCHOLAR_MCP_S2_API_KEY}" -e "SCHOLAR_MCP_DOCLING_URL=${SCHOLAR_MCP_DOCLING_URL}" -e "SCHOLAR_MCP_VLM_API_URL=${SCHOLAR_MCP_VLM_API_URL}" -e "SCHOLAR_MCP_VLM_API_KEY=${SCHOLAR_MCP_VLM_API_KEY}" -e "SCHOLAR_MCP_VLM_MODEL=${SCHOLAR_MCP_VLM_MODEL}" -e "SCHOLAR_MCP_CACHE_DIR=${SCHOLAR_MCP_CACHE_DIR}" -e "SCHOLAR_MCP_CONTACT_EMAIL=${SCHOLAR_MCP_CONTACT_EMAIL}" -e "SCHOLAR_MCP_EPO_CONSUMER_KEY=${SCHOLAR_MCP_EPO_CONSUMER_KEY}" -e "SCHOLAR_MCP_EPO_CONSUMER_SECRET=${SCHOLAR_MCP_EPO_CONSUMER_SECRET}" -e "SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY=${SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY}" -e "SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S=${SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S}" -e "SCHOLAR_MCP_JOBS_RESULT_TTL_S=${SCHOLAR_MCP_JOBS_RESULT_TTL_S}" -e "SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT=${SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT}" -- uvx pvliesdonk-scholar-mcp==2.0.0

    {
  "mcpServers": {
    "scholar": {
      "command": "uvx",
      "args": [
        "pvliesdonk-scholar-mcp==2.0.0"
      ],
      "env": {
        "SCHOLAR_MCP_KV_STORE_URL": "${SCHOLAR_MCP_KV_STORE_URL}",
        "SCHOLAR_MCP_TOOLS_ALLOW": "${SCHOLAR_MCP_TOOLS_ALLOW}",
        "SCHOLAR_MCP_TOOLS_DENY": "${SCHOLAR_MCP_TOOLS_DENY}",
        "SCHOLAR_MCP_SERVER_NAME": "${SCHOLAR_MCP_SERVER_NAME}",
        "SCHOLAR_MCP_INSTANCE_DESCRIPTION": "${SCHOLAR_MCP_INSTANCE_DESCRIPTION}",
        "SCHOLAR_MCP_INSTRUCTIONS_EXTRA": "${SCHOLAR_MCP_INSTRUCTIONS_EXTRA}",
        "SCHOLAR_MCP_INSTRUCTIONS": "${SCHOLAR_MCP_INSTRUCTIONS}",
        "FASTMCP_LOG_LEVEL": "${FASTMCP_LOG_LEVEL}",
        "FASTMCP_ENABLE_RICH_LOGGING": "${FASTMCP_ENABLE_RICH_LOGGING}",
        "SCHOLAR_GITHUB_TOKEN": "${SCHOLAR_GITHUB_TOKEN}",
        "SCHOLAR_MCP_READ_ONLY": "${SCHOLAR_MCP_READ_ONLY}",
        "SCHOLAR_MCP_S2_API_KEY": "${SCHOLAR_MCP_S2_API_KEY}",
        "SCHOLAR_MCP_DOCLING_URL": "${SCHOLAR_MCP_DOCLING_URL}",
        "SCHOLAR_MCP_VLM_API_URL": "${SCHOLAR_MCP_VLM_API_URL}",
        "SCHOLAR_MCP_VLM_API_KEY": "${SCHOLAR_MCP_VLM_API_KEY}",
        "SCHOLAR_MCP_VLM_MODEL": "${SCHOLAR_MCP_VLM_MODEL}",
        "SCHOLAR_MCP_CACHE_DIR": "${SCHOLAR_MCP_CACHE_DIR}",
        "SCHOLAR_MCP_CONTACT_EMAIL": "${SCHOLAR_MCP_CONTACT_EMAIL}",
        "SCHOLAR_MCP_EPO_CONSUMER_KEY": "${SCHOLAR_MCP_EPO_CONSUMER_KEY}",
        "SCHOLAR_MCP_EPO_CONSUMER_SECRET": "${SCHOLAR_MCP_EPO_CONSUMER_SECRET}",
        "SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY": "${SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY}",
        "SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S": "${SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S}",
        "SCHOLAR_MCP_JOBS_RESULT_TTL_S": "${SCHOLAR_MCP_JOBS_RESULT_TTL_S}",
        "SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT": "${SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT}"
      }
    }
  }
}
    {
  "servers": {
    "scholar": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "pvliesdonk-scholar-mcp==2.0.0"
      ],
      "env": {
        "SCHOLAR_MCP_KV_STORE_URL": "${SCHOLAR_MCP_KV_STORE_URL}",
        "SCHOLAR_MCP_TOOLS_ALLOW": "${SCHOLAR_MCP_TOOLS_ALLOW}",
        "SCHOLAR_MCP_TOOLS_DENY": "${SCHOLAR_MCP_TOOLS_DENY}",
        "SCHOLAR_MCP_SERVER_NAME": "${SCHOLAR_MCP_SERVER_NAME}",
        "SCHOLAR_MCP_INSTANCE_DESCRIPTION": "${SCHOLAR_MCP_INSTANCE_DESCRIPTION}",
        "SCHOLAR_MCP_INSTRUCTIONS_EXTRA": "${SCHOLAR_MCP_INSTRUCTIONS_EXTRA}",
        "SCHOLAR_MCP_INSTRUCTIONS": "${SCHOLAR_MCP_INSTRUCTIONS}",
        "FASTMCP_LOG_LEVEL": "${FASTMCP_LOG_LEVEL}",
        "FASTMCP_ENABLE_RICH_LOGGING": "${FASTMCP_ENABLE_RICH_LOGGING}",
        "SCHOLAR_GITHUB_TOKEN": "${SCHOLAR_GITHUB_TOKEN}",
        "SCHOLAR_MCP_READ_ONLY": "${SCHOLAR_MCP_READ_ONLY}",
        "SCHOLAR_MCP_S2_API_KEY": "${SCHOLAR_MCP_S2_API_KEY}",
        "SCHOLAR_MCP_DOCLING_URL": "${SCHOLAR_MCP_DOCLING_URL}",
        "SCHOLAR_MCP_VLM_API_URL": "${SCHOLAR_MCP_VLM_API_URL}",
        "SCHOLAR_MCP_VLM_API_KEY": "${SCHOLAR_MCP_VLM_API_KEY}",
        "SCHOLAR_MCP_VLM_MODEL": "${SCHOLAR_MCP_VLM_MODEL}",
        "SCHOLAR_MCP_CACHE_DIR": "${SCHOLAR_MCP_CACHE_DIR}",
        "SCHOLAR_MCP_CONTACT_EMAIL": "${SCHOLAR_MCP_CONTACT_EMAIL}",
        "SCHOLAR_MCP_EPO_CONSUMER_KEY": "${SCHOLAR_MCP_EPO_CONSUMER_KEY}",
        "SCHOLAR_MCP_EPO_CONSUMER_SECRET": "${SCHOLAR_MCP_EPO_CONSUMER_SECRET}",
        "SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY": "${SCHOLAR_MCP_GOOGLE_BOOKS_API_KEY}",
        "SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S": "${SCHOLAR_MCP_JOBS_SOFT_DEADLINE_S}",
        "SCHOLAR_MCP_JOBS_RESULT_TTL_S": "${SCHOLAR_MCP_JOBS_RESULT_TTL_S}",
        "SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT": "${SCHOLAR_MCP_JOBS_MAX_PER_SUBJECT}"
      }
    }
  }
}
    name: my-agent
target: local
servers:
- hub: io.github.pvliesdonk/scholar-mcp
    • not probed yet: tools unpinned, ingest lists them

    tools

    Not probed yetThe tools appear once the hub or its worker has listed this entry. Running it still works: your client lists them on first start.